A collection of tools for DNA modelling
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Tools
XYZ → oxDNA
cadnano → oxDNA
LAMMPS → oxDNA
PDB → oxDNA
Tiamat → oxDNA
CanDo → oxDNA
beta
vHelix → oxDNA
beta
scadnano → oxDNA
beta
oxDNA → LAMMPS
oxDNA → PDB
XYZ → oxDNA
Centerline file in XYZ format
Generate a closed strand
Generate a double strand
Generate a nicked double strand
Supercoiling density
Topological writhe
Pseudo-random number generator seed
Optional sequence file
Generate
Reset
Command log